Intermine data mining platform for C. elegans and related nematodes
Show all genes that are expressed in anchor cell, as an example - XW
Return all genes annotated with a particular phenotype. Select either observed or not observed.
Show the proteins for a particular gene.
Returns a list of all phenotypes attributed to a gene or a list of genes
Returns a list of cells/tissues where a specific gene is expressed.
Returns all genes within a specified chromosomal interval in a given species
Returns all genes of a particular transcript type from a given species
This query shows how to retrieve all GO annotations for a given gene, the evidence code for the annotation, and the PMID for the associated reference. kmva 2013-05-22
This query returns a list of all genes of an expression cluster. The default expression cluster is WBPaper00032062:age_regulated_genes
This query shows how to find all is_a descendants of a GO term. kmva 2013-05-22
shows all proteins with PFAM id PF13508. It is possible to restrict the species from the organism summary in the results.
returns all the known protein sequences of a species
Shows the Chromosomal location, the Gene that the CDS belongs to and the Protein that it makes and the length of the protein in amino-acids.
Return all of the non-Coding genes for my specified Species.
Give me all Transcripts from my favorite species (also returns the position).
List *all* experimentally obtained alleles for a given gene omitting polymorphisms and high-throughput alleles -- TWH
Create a table of CDSs from my favorite Transcript
Returns a list of all genes whose products are localized to a specified subcellular compartment
shows a mapping of protein identifiers to CDS, restricted to one species.
Return a list of Transcripts in a defined size range.
Keyset of Strain objects with a specific laboratory prefix.
Keyset of variation objects by Method type
This is a test template for the interMod beta tool test
Create a list of genes that have been flagged as belonging to an operon. (Currently only available for C. elegans and Brugia malayi).
What is the Chromosomal position of Transcripts on Chromosome
What is the Chromosomal position of Transcript X
This query shows how to retrieve all GO annotations for a given gene, the evidence code for the annotation and qualifier, and the PMID for the associated reference. pad 2016--2-24